Plant MITE

SE2850483

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9488
Sorghum bicolor
SE2850483
PIF/harbinger
To14
chromosome_1:44418411-44418657
TAA
AGGCCTTGTTTAGTTGC

Secondary structure and sequence

TSD TIR

5'

3'

TA   C        G  G AATTTTTT      AAAATGGACATTGTAGCATTTTCGTTTGTATTTGATAAATATTTTCAATCATAGACTAACTAGGCGCAAAAGATTTGTCTCGTAAATTACAGGC
  AGG CTTGTTTA TT C        TTTTGT                                                                                              
  ||| |||||||| || |        ||||||                                                                                               
  TCC GAACAAAT AA G        TTTTTA                                                                                              
AA   A        G  G -------A      AAATGTAAAAAAAGTTTTAAAGGATAGTGTAGCTTAGAACGCCGTGTACGTACATCGTAATTTATATCTATTTTTTATTGATTAACATGTCAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850483

TAAGGCCTTGTTTAGTTGCAATTTTTTTTTTGTAAAATGGACATTGTAGCATTTTCGTTTGTATTTGATAAATATTTTCAATCATAGACTAACTAGGCGCAAAAGATTTGTCTCGTAAATTACAGGCAAACTGTACAATTAGTTATTTTTTATCTATATTTAATGCTACATGCATGTGCCGCAAGATTCGATGTGATAGGAAATTTTGAAAAAAATGTAAAATTTTTAGGAAGTAAACAAGACCTAA

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