Plant MITE

SE2850484

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9489
Sorghum bicolor
SE2850484
PIF/harbinger
To2
chromosome_4:63281787-63282035
CAA
GGCC

Secondary structure and sequence

TSD TIR

5'

3'

CAA    --  --     -   ----    ------  CGAAAAGATTTCGCGACACTGTAGCACTTTCGTTTGTTTGTGGTAATTATTATCCAATCATGGCCTAACTAGGCTCAAAAGATTCGTCTCGTAA
   GGCC  GT  GTTTA GTT    CGTG      GA                                                                                              
   ||||  ||  ||||| |||    ||||      ||                                                                                               
   CCGG  CA  TGAAG TGG    TATG      AA                                                                                              
AAC    AA  AA     G   GTTT    GTTTTA  AAGTTCTAAGAGGCAGTGTAGCTTAGAAATCCGGGTACGTACTTCATAATTTATATCTGTTTTTATTTTTGATTAACGTGTCAAACCAGCTTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850484

CAAGGCCGTGTTTAGTTCGTGGACGAAAAGATTTCGCGACACTGTAGCACTTTCGTTTGTTTGTGGTAATTATTATCCAATCATGGCCTAACTAGGCTCAAAAGATTCGTCTCGTAAATTTCGACCAAACTGTGCAATTAGTTTTTATTTTTGTCTATATTTAATACTTCATGCATGGGCCTAAAGATTCGATGTGACGGAGAATCTTGAAAAATTTTGGTATTTTGGGTGGAAGTAAACAAGGCCCAA

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