SE2820486

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9491
  • Sorghum bicolor
  • SE2820486
  • Mutator
  • M13
  • chromosome_6:31709658-31709946
  • TTTATGAAA
  • AAAGAGTTAAATGCATTAGCGGCCCCTGAACTTGTCAAGGGGTGCCACTTAGGTCCACAAACTTTGAAAATGCATTTCTGGGTCCCTAAACTTGTTAAGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTATG                T  C               C         CAC          A             C   TCT     C                --------------------A    T  CACATCCTAAACTTGTAAAAT
      AAAGAGTTAAATGCAT AG GGCCCCTGAACTTGT AAGGGGTGC   TTAGGTCCAC AACTTTGAAAATG ATT   GGGTC CTAAACTTGTTAAGTG                     TGCA TG                     
      |||||||||||||||| || ||||||||||||||| |||||||||   |||||||||| ||||||||||||| |||   ||||| ||||||||||||||||                     |||| ||                      
      TTTCTCAATTTACGTG TT CCGGGGACTTGAACA TTCCCCACG   AATCCAGGTG TTGAAACTTTTGC TAA   TCCAG GATTTGAATAATTCAC                     CCAG GT                     
AAAGAA                C  A               A         ATA          C             A   --T     A                CACATAACGTCACCAACCATA    -  CTTTACCTGGACGTCACGTGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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