SE2850488

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9493
  • Sorghum bicolor
  • SE2850488
  • PIF/harbinger
  • To2
  • chromosome_3:13782667-13783175
  • TTA
  • AGGCCTTGTTTAGTTCCTTTCTAAAATCTAAATTTTTTTAGAATT

Secondary structure and sequence

TSD    TIR
5'



3'
TT            G    T   T          T            -----C    TT  ATTAAAATTTTAGACACACGTATTTGGACATATGCATGGAGCATTAAATATAAATAAAAATAAAAACTAATTACACAGTTTATTTGTAATTTGCAAGACAAATCTTTTAAGCCTAGTTAGTCTATAATTAGACAATATTTGTCACATACAAACAAAATTGCTACAGTGCCCGTTCCCTAAAAAAATTTGGAACTAA
  AGGCCTTGTTTA TTCC TTC AAAATCTAAA TTTTTTAGAATT      TCTA  AT                                                                                                                                                                                                    
  |||||||||||| |||| ||| |||||||||| ||||||||||||      ||||  ||                                                                                                                                                                                                    A
  TCCGGAGCAAAT AAGG GAG TTTTAGGTTT AAAAAGTTTTAA      GTGT  GC                                                                                                                                                                                                    
AT            G    T   T          T            AGGGCA    -A  TTAGAAATCTGCATACGTACCTCATAATTTATATCTGCTTTTATTTCTGATTAACGTGTCAAACTAAACATAACTGCTCTGTTTAGAAAACTTAGATCAATCAGGTACCAACCTGTTATTAATGGTCTTTGTTTGCTTTTACGATATCACAGCGCTTTAAAAAAACAACTCCTTGATTTGTGCCGGATTCTGGAAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End