Plant MITE

SE2830489

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9494
Sorghum bicolor
SE2830489
hAT
Hat37
chromosome_9:40514518-40515091
CTACTAGG
CTAGGTAAAGATGGCAATTTTTACCCG

Secondary structure and sequence

TSD TIR

5'

3'

CTA    --   AA         ----TT       AA    GAA   CGATGGGTAATTACCTCATTAGGGTAAGGGTAAGCTATTTTTTTTATCCATGGGTAAGATAATGGAAAAAAAGCTTTACCCAGCGGGTAAAGCGGGTAAGGGTATGGGACTGCATTGCCCATACCCGTTAACCCATGGGTAAATTGAACCCGATAAATTATACTAGAATCATGGAACTTGTGGATTTTATGACTTGTTATCTAGTAATGATGGATTTACCCATTAGATCATTTGATTGTGTGTT
   CTAG  GTA  GATGGCAAT      TTACCCG  ACCC   ACC                                                                                                                                                                                                                                                    
   ||||  |||  |||||||||      |||||||  ||||   |||                                                                                                                                                                                                                                                    T
   GATC  CAT  CTACCGTTA      AATGGGC  CCCA   TAC                                                                                                                                                                                                                                                    
  G    AT   CC         CCCATT       GA    ---   ACAATGGGTATGGGAATGGGTGCTCTTTTATAAAATGGGCAATTAAATGGGTATGGGCACGTGCACATTCTCAAAAAAGGGTATGGGAATGGGTACGCCCATTGCCCATTGGGTACCCAATAGAAATGGATACTAAAATTCTTATAAACGATACTTTTTTTATGTACAAAATTATATAGTCTGAGGGTTTAAATCGATTTTATAGTATTTAGTAATTATTTAAGAAGTTTATATGTTCGATGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830489

CTACTAGGTAAAGATGGCAATTTTTACCCGAAACCCGAAACCCGATGGGTAATTACCTCATTAGGGTAAGGGTAAGCTATTTTTTTTATCCATGGGTAAGATAATGGAAAAAAAGCTTTACCCAGCGGGTAAAGCGGGTAAGGGTATGGGACTGCATTGCCCATACCCGTTAACCCATGGGTAAATTGAACCCGATAAATTATACTAGAATCATGGAACTTGTGGATTTTATGACTTGTTATCTAGTAATGATGGATTTACCCATTAGATCATTTGATTGTGTGTTTATGTAGCTTGTATATTTGAAGAATTTATTAATGATTTATGATATTTTAGCTAAATTTGGGAGTCTGATATATTAAAACATGTATTTTTTTCATAGCAAATATTCTTAAAATCATAGGTAAAGATAACCCATGGGTTACCCGTTACCCGCATGGGTAAGGGTATGGGAAAAAACTCTTACACGTGCACGGGTATGGGTAAATTAACGGGTAAAATATTTTCTCGTGGGTAAGGGTATGGGTAACACATACCCAGCGGGTAATTACCCATTGCCATCCCTACTACTAGG

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