Plant MITE

SE2810492

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9497
Sorghum bicolor
SE2810492
Tc1/Mariner
St7
chromosome_2:63271243-63271505
TA
TACTCCCTCCGTATAGGATTTAGAAGTCGTTTTTTGGACAGGG

Secondary structure and sequence

TSD TIR

5'

3'

         C                      TTT   C  G TTTG    AAACA  G         --ATCA   ----    CTTTAAATTGTTGAGTTTACAAATGTGAAAATTATATGAATAGATTTTCCTTG
TACTCCCTC GTATAGGATTTAGAAGTCGTTT   GGA AG G    GGTC     TT AGAATATAA      TCA    ATAA                                                     
||||||||| ||||||||||||||||||||||   ||| || |    ||||     || |||||||||      |||    ||||                                                      
ATGAGGGAG TATATCCTAAATCTTCAGCAAA   CCT TC C    CCAG     AG TTTTGTGTT      GGA    AAAA                                                     
         A                      --T   A  G TGTG    -----  G         GAAACT   GAAG    ATATTTTTATAAATCCTTATATATATATGTGTGTGAAAATACTATCATAAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810492

TACTCCCTCCGTATAGGATTTAGAAGTCGTTTTTTGGACAGGGTTTGGGTCAAACATTGAGAATATAAATCATCAATAACTTTAAATTGTTGAGTTTACAAATGTGAAAATTATATGAATAGATTTTCCTTGAAAAATACTATCATAAAAGTGTGTGTATATATATATTCCTAAATATTTTTATAAAAAGAAGAGGTCAAAGTTGTGTTTTGGAGACCGTGTCGCTATCCTAAACGACTTCTAAATCCTATATAGAGGGAGTA

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