SE2850495

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9500
  • Sorghum bicolor
  • SE2850495
  • PIF/harbinger
  • To1
  • chromosome_6:52177359-52177607
  • TAA
  • AGGCCTTGTTTAGTTCCGAAAAGATTTCGGATTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                -----------       A     -      GGTA    A   ATTTC    -   TGTGACAAATATTATCCAATTATGGACTAACTAGAATCAAAAGATTCGTCTCGCGATTT
  AGGCCTTGTTTAGTTC           CGAAAAG TTTCG GATTTC    CCGT GCA     GTTT GTT                                                           
  ||||||||||||||||           ||||||| ||||| ||||||    |||| |||     |||| |||                                                           C
  TCCGGAACAAATCAAG           GTTTTTC AAAGT CTAAGG    GGCA TGT     TAGA TGC                                                           
AA                TGGAGTTTTTC       A     T      ----    G   -AGCT    A   CGTGTACGTACTTCGTAATTTATATTTACTTTTGTTTTTGATAAATGTGTCAAATTGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3