SE2810500

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9505
  • Sorghum bicolor
  • SE2810500
  • Tc1/Mariner
  • St27
  • chromosome_2:62637740-62637984
  • TA
  • TACTTCCCTCCACTGCAAATTTTAAGTTGTATCAGCTTTGTCCTAAGTCAAACTTGTCTAGCTTTGACTAAGTTTATAGAAAAGTACATTAACATCTGTGATATCAAACTATATATCACGG

Secondary structure and sequence

TSD    TIR
5'



3' 
    T      AC G      T        ATC               C      G        T                    A   T                     T  A   -C  TG
TACT CCCTCC  T CAAATT TAAGTTGT   AGCTTTGTCCTAAGT AAACTT TCTAGCTT GACTAAGTTTATAGAAAAGT CAT AACATCTGTGATATCAAACTA AT TCA  GG  
|||| ||||||  | |||||| ||||||||   ||||||||||||||| |||||| |||||||| |||||||||||||||||||| ||| ||||||||||||||||||||| || |||  ||  T
ATGA GGGAGG  A GTTTAA ATTCAGCA   TCGAAACAGGATTCA TTTGAA AGATCGAA CTGATTCAAATATCTTTTTA GTA TTGTAGATGTTGTAGTTTGAT TA AGT  TC  
    -      CA G      C        ACA               A      G        -                    C   T                     C  -   AA  TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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