Plant MITE

SE2850502

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9507
Sorghum bicolor
SE2850502
PIF/harbinger
To21
chromosome_8:7181388-7181571
TTA
AGGGCCTGTTTGGTTCCCCTTGCTAAATTTTAGCTAGCTAA

Secondary structure and sequence

TSD TIR

5'

3'

TT   G                                     AATT       C    C    --G    TAATGGAACTAAACTATTTTAGCT
  AGG CCTGTTTGGTTCCCCTTGCTAAATTTTAGCTAGCTAA    ATTTTAG TACT TTGG   TGAC                        
  ||| |||||||||||||||||||||||||||||||||||||    ||||||| |||| ||||   ||||                        C
  TCC GGACAAACCAAGGGGGATGATTTAAAATCGATCGATT    TGAAATC GTGA AATC   GACT                        
AT   G                                     ----       A    -    ATC    TCAAGGTTTGTGTAACTGATTTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850502

TTAGGGCCTGTTTGGTTCCCCTTGCTAAATTTTAGCTAGCTAAAATTATTTTAGCTACTCTTGGGTGACTAATGGAACTAAACTATTTTAGCTCCTTTTAGTCAATGTGTTTGGAACTTCAGCTACTAAAGTGACTAAAGTTTAGCTAGCTAAAATTTAGTAGGGGGAACCAAACAGGGCCTTA

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