Plant MITE

SE2850505

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9510
Sorghum bicolor
SE2850505
PIF/harbinger
To30
chromosome_5:59863549-59863838
TAA
AGAGCAACTCCAAGAGA

Secondary structure and sequence

TSD TIR

5'

3'

TA                 --     TAAAA  -----------    -------  AAATTCAAGATTTAGCCAACCTCTAAAATTGAAAATCATATAAAAAAACACAAATCTCCAACAGTCTTTCTATACGGCAAATCATATGGCTAACGGGACA
  AGAGCAACTCCAAGAGA  GTTGG     AG           ATGG       CT                                                                                                    
  |||||||||||||||||  |||||     ||           ||||       ||                                                                                                    T
  TCTCGTTGAGGTTCTCT  TCGAT     AG           AAGA       GG                                                                                                    
AA                 TC     -----  GTACAATACAT    TATAAAC  ATAAAACCCTCTCTTTTCTCTCAGGTTGTCGATACCATAAACCAAACGATTTTATCGTTCAGTAGATAAGGCCTCAAGAGCGTACCATTTATATCGAACG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850505

TAAGAGCAACTCCAAGAGAGTTGGTAAAAAGATGGCTAAATTCAAGATTTAGCCAACCTCTAAAATTGAAAATCATATAAAAAAACACAAATCTCCAACAGTCTTTCTATACGGCAAATCATATGGCTAACGGGACATGCAAGCTATATTTACCATGCGAGAACTCCGGAATAGATGACTTGCTATTTTAGCAAACCAAATACCATAGCTGTTGGACTCTCTTTTCTCTCCCAAAATAGGCAAATATAGAATACATAACATGGATAGCTCTTCTCTTGGAGTTGCTCTAA

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