SE2850507

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9512
  • Sorghum bicolor
  • SE2850507
  • PIF/harbinger
  • To26
  • chromosome_7:1399519-1400006
  • TAA
  • GCATTGTTTAGTTCACCTGAAAACCAAAAAGTTTTCAAAATTCTCCGTCACATATCGAATCTTATGGCACATG

Secondary structure and sequence

TSD    TIR
5'



3'
TAAC  A           A -      A               A             TA         A         CATCAAA               A        A                G         AC  T       -G                                                                     TTTTTCACTTTTCGGAACTAAACAATG
    GC TTGTTTAGTTC C CTGAAA CCAAAAAGTTTTCAA ATTCTCCGTCACA  TCGAATCTT TGGCACATG       CATTAAATATAGACG AAACAAAA CTAATTACACAGTTTA TTGTAAATC  GA ACGAATC  TTGATCCTAGTTAGTCTATGATTGGATAATATTTGTCACAAACAAACGAAAGTGCTACAGTACCGAAAA                           
    || ||||||||||| | |||||| ||||||||||||||| |||||||||||||  ||||||||| |||||||||       ||||||||||||||| |||||||| |||||||||||||||| |||||||||  || |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                           C
    CG AACAAATCAAG G GGCTTT GGTTTTTCAAAAGTT TAAGGGGCAGTGT  AGCTTAGAA GCTGTGTAC       GTGATTTATATCTGT TTTGTTTT GATTAATGTGTCAAAT GACATTTAG  TT TGCTTAG  AACTGGGATCAATCAGATATTAACCTGTTATAAACGGTGTTTGTTTGCTTTCACGATGTCATCGCTTTA                           
AATC  G           G T      A               C             --         C         ACACTTC               C        -                G         CA  C       AA                                                                     GGTTTTTCTAAAGCGTAGATTTGAATC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End