SE2850508

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9513
  • Sorghum bicolor
  • SE2850508
  • PIF/harbinger
  • To1
  • chromosome_9:8277029-8277277
  • TTA
  • AGCCCTTGTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT  C         AATGCACCCAAAAATCCAAAACTTTAC     TTTCCATCACATCGAATCTTACGACACATGAATAGAAGATTAAATATAAATAAAAAAGATAATTAATTACACAGTTTATCTGTAAATCAC
  AG CCTTGTTTA                           AAGAT                                                                                          
  || |||||||||                           |||||                                                                                          G
  TC GGAACAAAT                           GTTTT                                                                                          
AT  C         ------------------------CTA     TTGTAAAACCTAAAACTGTGACATCGTGAAAGCAAAAATAAACTGTTTGTAACAGATTAGTACCTCATTGATCCGAATTTTCTAAACATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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