SE2850509

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9514
  • Sorghum bicolor
  • SE2850509
  • PIF/harbinger
  • To1
  • chromosome_6:52606046-52606294
  • TAA
  • AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                   -     TTTTGGTTTTCGAAACTGTAGCACTTTCGTTTTTATTTGACAAACATTGTCCAATCATGAAGTAACTAGGCTTAAAAAATTCATCTCGCGATTTACAG
  AGGCCTTGTTTAGTTCCGA AAACT                                                                                                  
  ||||||||||||||||||| |||||                                                                                                   
  TCCGGAATAAATCAAGTGG GTTTT                                                                                                  
AA                   G     AGGTTTTTGAAAAGTTCTAAGGAGCAGTATAGCTTAGAATGCCGTGTACGTACTTCGTGATTTATATCTGCTTTTATTTTTGATTAACGTGTCAAATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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