SE2850510

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9515
  • Sorghum bicolor
  • SE2850510
  • PIF/harbinger
  • To1
  • chromosome_1:3139161-3139408
  • TAA
  • AGGCCTTGTTTAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C           ACAC       ----------CCAAA  TTTACAAGATTCCTCATCACATCGAATCTTGCGGTACATGTATGGAGTATTAAATATAGATAAAAATAAAAACTAATTACACAGT
  AGG CTTGTTTAGAT    CAAAAAC               AC                                                                                     
  ||| |||||||||||    |||||||               ||                                                                                     T
  TCC GAACAAATCTA    GTTTTTG               TG                                                                                     
AA   C           ---C       AAAAACTTAAAACTG  GCATCGTGAAAGCAAAAATAAACTGTTTGTAACAGGTTAGTACCTCATTGATCTGAATTTTCTAAGCAGAGCGCTAAATGTCTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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