SE2850511

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9516
  • Sorghum bicolor
  • SE2850511
  • PIF/harbinger
  • To64
  • chromosome_3:62362798-62363098
  • TTA
  • AGAGCATCTCCAAGGGCCTCTCCAAATCAGTTTTGCATTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT       C                                 ---    TA     -- AAGTCTCAAAACAAAATGCAAAGCCTAAAAAGATGCCTATTCCAAGGGCCTTTGCAAAACTGACTTGGCATACTCTATTTTGCCAAACCCAGAG
  AGAGCAT TCCAAGGGCCTCTCCAAATCAGTTTTGCATTTG   AGGT  TTTGC  A                                                                                              
  ||||||| |||||||||||||||||||||||||||||||||   ||||  |||||  |                                                                                               
  TCTCGTA AGGTTCCCGGAGAGGTTTAGTCAAAACGTAAAC   TAAA  CGTTT  T                                                                                              
AT       T                                 CAT    --     TT GGTGTTTTTCCCCCGAGGTTACCAAAACGTTTACTCAAAACGTAAACACGTTTGAAACGTTTAGAAGGAGGGTTGAACCGTAAATACGTCTCCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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