SE2820514

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9519
  • Sorghum bicolor
  • SE2820514
  • Mutator
  • M14
  • chromosome_5:12703775-12704534
  • GACAAAAAA
  • GGCACAATAGCCATTTTGGTCCCTCAACTATTACTCGAGGCTCAATTTCGTCCCTAAATTTTTAAAACGGCCATTCTAGTCCTCA

Secondary structure and sequence

TSD    TIR
5'



3'
GACAAAAAA    C     C                         G                                  CA  C         AACTT  G       C        GG   -AC    A        A      CA    C             T   A           CCAT       C      --------CA          TA   CC           G     TCAAAAATAAAA    ---  --    -     ATAATTTCATCCATTCAATATATCCATGTATTCTTGAAGAATAAATAGTGTTCGATGTAACTATAATTGCTCCCACAAATATCAATTTAGTTGGACATATATAAATGGTACAATTA
         GGCA AATAG CATTTTGGTCCCTCAACTATTACTC AGGCTCAATTTCGTCCCTAAATTTTTAAAACGGC  TT TAGTCCTCA     TA TTTTAGG TCAGTTTT  CCT   AACT TGAAGATG TCGTTT  GTCC TAAATTTTGTATT TGG CTCAATTTCAT    AAACTAT AAAGTG          TTTAACTTTT  TTT  AACTCAATTTT TCTAT            CATT   AT  ATTT TAAGC                                                                                                                    
         |||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  || |||||||||     || ||||||| ||||||||  |||   |||| |||||||| ||||||  |||| ||||||||||||| ||| |||||||||||    ||||||| ||||||          ||||||||||  |||  ||||||||||| |||||            ||||   ||  |||| |||||                                                                                                                    T
         CCGT TTATC GTAAAACCAGGGAGTTGATAATGAG TCCGAGTTAAAGCAGGGATTTGAAAGTTTTGCTG  AA ATCAGGAGT     AT AAAATCC AGTCAAAG  GGA   TTGA ACTTCTAC AGCAAA  CAGG GTTTGAAACATAA ACT GAGTTAAAGTA    TTTGATA TTTCAC          AAATTGAAAA  AAA  TTGAGTTGAAG AGATA            CAAC   CG  TTAC ACGTG                                                                                                                    
AAAAAACAG    C     A                         G                                  AC  A         CTCAT  G       A        TA   ATC    C        C      AC    A             T   C           AAAT       A      ATAAAATAGG          TA   AA           A     ------------    ATG  CC    G     ATAACATGTAGTAATCGAGGTTGTGGTGGTTGTTAACTTCTATCTTTTTATTATAAATAGGTTTTTGAGAAAGTACCGGTAACTATTAAGATTCGACAATAAAAATCACAATGGAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End