Plant MITE

SE2810516

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9521
Sorghum bicolor
SE2810516
Tc1/Mariner
St9
super_15:640977-641233
TA
TACTCCCTCCATCCTTAAGTCATTCCAAAAATCTTGTAGAGTTAAAATATCTTAAGTTTGACCAAATTTATATGA

Secondary structure and sequence

TSD TIR

5'

3'

               ------  A  C       A       T         A              C   AT     T  TAACATAAT  T          C   C  A    CGT    -TTCTT  TT
TACTCCCTCCATCCT      TA GT ATTCCAA AATCTTG AGAGTTAAA TATCTTAAGTTTGA CAA  TTATA GA         AA ATTTATGATA CAA TA GTAT   TAGG      CA  
|||||||||||||||      || || ||||||| ||||||| ||||||||| |||||||||||||| |||  ||||| ||         || |||||||||| ||| || ||||   ||||      ||  A
ATGAGGGAGGTAGGG      AT CA TAAGGTT TTAGAAT TCTCAGTTT GTAGAGTTTAAACT GTT  AATAT CT         TT TAAATACTGT GTT AT TATA   ATTC      GT  
               TTAAAT  A  A       C       C         C              A   AT     -  TTCGAATCT  C          A   T  C    ATT    TTTTAT  TA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810516

TACTCCCTCCATCCTTAAGTCATTCCAAAAATCTTGTAGAGTTAAAATATCTTAAGTTTGACCAAATTTATATGATAACATAATAATATTTATGATACCAACTAAGTATCGTTAGGTTCTTCATTAATTGTATTTTCTTATTAATATCTATTTGATGTCATAAATCTTTCTAAGCTTTCTATAATATTGATCAAATTTGAGATGCTTTGACTCTCTAAGATTCTTGGAATAACATATAAATTGGGATGGAGGGAGTA

Copy Cancel