SE2850517

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9522
  • Sorghum bicolor
  • SE2850517
  • PIF/harbinger
  • To26
  • super_120:29953-30189
  • TAA
  • AGGCCTTGTTTAGTTACCAAAAAATTTCAAGATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               AC      A   CAA     CCC    CATCGAATCTTGCGGTACATGCATGGAGTATTAAATTTAAACGAAAACAAAAACTAATTACGCAGTTTGCTTGTA
  AGGCCTTGTTTAGTT  CAAAAA TTT   GATTT   GTCA                                                                           
  |||||||||||||||  |||||| |||   |||||   ||||                                                                           A
  TCCGGAACAAATCAA  GTTTTT AAA   CTAAA   CATG                                                                           
AA               CC      A   --C     ACC    ACATCGTGAAAGCAAACAAACACCGTTTATAATAGGTTAGTATCTGATTAATCCCAGTTTCTAAGTAGAGCGCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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