Plant MITE

SE2850522

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9527
Sorghum bicolor
SE2850522
PIF/harbinger
To67
chromosome_4:19635752-19635980
TTT
GGCTCTGTTTGGTTTGAGGAATGAGGTGGTCCATT

Secondary structure and sequence

TSD TIR

5'

3'

TTT  CTC           A   ---------------          C    ATTCTCAC      CTTTTTTAT -      GTGGAATGGCATGAGTTGATCTATCACCACCTTATTCCCCACAAGCT
   GG   TGTTTGGTTTG GGA               ATGAGGTGGT CATT        TCCTCA         T TGGTTT                                               
   ||   ||||||||||| |||               |||||||||| ||||        ||||||         | ||||||                                                
   CC   ATAAACCAAAC CCT               TACTCCACTA GTAG        TACTCA         A TAGGGT                                               
TTT  CAC           A   CAGTGGGATACGAAG          C    --------      --------- G      ACTTAAAATCACCCTAGTTGGGTAAGGAGTACGTATACGATTAATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850522

TTTGGCTCTGTTTGGTTTGAGGAATGAGGTGGTCCATTATTCTCACTCCTCACTTTTTTATTTGGTTTGTGGAATGGCATGAGTTGATCTATCACCACCTTATTCCCCACAAGCTAATAATTAGCATATGCATGAGGAATGGGTTGATCCCACTAAAATTCATGGGATGAACTCATGATGCATCACCTCATGAAGCATAGGGTGACTCCACAAACCAAATACACCCTTT

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