SE2810524

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9529
  • Sorghum bicolor
  • SE2810524
  • Tc1/Mariner
  • St9
  • chromosome_8:6604590-6604859
  • TA
  • TACTCCCTCCATACCAA

Secondary structure and sequence

TSD    TIR
5'



3'
     C  C   AC   AATTATA   A              C  C    A        C        G          T     T  TA  A  AT                 T TA   TCATTACATTATT  TT
TACTC CT CAT  CAA       ATT TAAGTTATTCCAAG AT TTGG GAGTCAAA CATCTCAA TTTGACCAAA TTATA GG  AG TA  AATATTTATGGTGTCAA T  GTA             TA  
||||| || |||  |||       ||| |||||||||||||| || |||| |||||||| |||||||| |||||||||| ||||| ||  || ||  ||||||||||||||||| |  |||             ||  A
ATGAG GA GTA  GTT       TAA GTTCAGTAAGGTTC TA AATC TTCAGTTT GTAGAGTT AAATTGGTTT AATAT TC  TT AT  TTATAAATATTGTAGTT A  CAT             AT  
     A  A   GA   -------   C              T  C    C        C        G          T     C  TC  A  GT                 T TC   CTTATACTTTTAT  TA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End