Plant MITE

SE2850526

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9531
Sorghum bicolor
SE2850526
PIF/harbinger
To2
chromosome_6:2446168-2446416
TTA
AGGCCTTGTTTACTTCC

Secondary structure and sequence

TSD TIR

5'

3'

TT            C    ACCCATAAACCCAAAATTT       ---   CCTGTCACATCGAATCTTTAGACGCATGCATGGAATATTAAATATAAATAAAAATAAAAACTAATTGCACAGTTTGGTCGAAAT
  AGGCCTTGTTTA TTCC                   TTCAAGA   TTC                                                                                    
  |||||||||||| ||||                   |||||||   |||                                                                                    T
  TCCGGAACAAAT AAGG                   GCTTCAC   TTA                                                                                    
AT            C    -------------------       TTT   AAGCACTGTGACATCGTGAAAGCAAACAAACACCATTAATAATAGGTTGATATCTAATTGATCCGAGTTTTCTAAGCAGAGCAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850526

TTAGGCCTTGTTTACTTCCACCCATAAACCCAAAATTTTTCAAGATTCCCTGTCACATCGAATCTTTAGACGCATGCATGGAATATTAAATATAAATAAAAATAAAAACTAATTGCACAGTTTGGTCGAAATTGACGAGACGAATCTTTTGAGCCTAGTTAATCTATAGTTGGATAATAATTACCACAAACAAACGAAAGTGCTACAGTGTCACGAAATTTTTCACTTCGGGAACTAAACAAGGCCTTA

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