SE2850527

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9532
  • Sorghum bicolor
  • SE2850527
  • PIF/harbinger
  • To2
  • chromosome_1:7707567-7707815
  • TAA
  • AGGCCTTGTTTAGTTTCCAAAAAAATTTGCAAAATTTTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               TC       A          -------------     ----------------------      C CGTCACATCGAATCTTTAGACGCATGCATGGAGTATTAAATATAGACGAAAATAAAAA
  AGGCCTTGTTTAGTT  CAAAAAA TTTGCAAAAT             TTTTC                      AGATTC C                                                          
  |||||||||||||||  ||||||| ||||||||||             |||||                      |||||| |                                                           
  TCCGGAACAAATCAA  GTTTTTT AAACGTTTTA             AAAAG                      GATTAG T                                                          
AA               -C       A          CCCATGACATCGT     CAAACATAAACTATTTATAACA      - ACCTGATTGATCCGAATTTTCTAAGCAGAGCAGTTAAGGCTAGTTTGACACGTTAATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3