SE2850530

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9535
  • Sorghum bicolor
  • SE2850530
  • PIF/harbinger
  • To14
  • chromosome_2:68182730-68182977
  • TTA
  • AGGCCTTGTTTAGTTTCCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               T    AATA           ---TTCTC    ---- TTCCATCACATATAATCTTACGGCACATACATGAATCACTAAATATAGATAAAAGAAATAACTAATTACACAGT
  AGGCCTTGTTTAGTT CCAA    TTTTGTAAAAT        AGAT    T                                                                          
  ||||||||||||||| ||||    |||||||||||        ||||    |                                                                          C
  TCCGGAACAAATCAA GGTT    AAAACGTTTTA        ATCG    A                                                                          
AT               -    -AAA           TCCTTATC    TAAA GCAAACATAAACTGTTTATAACAGGCTAGTATCTGATTGATCCGAATTTTCTAAACAGAGTGTTTAATGTCTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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