Plant MITE

SE2810531

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9536
Sorghum bicolor
SE2810531
Tc1/Mariner
St1
chromosome_8:311740-311978
TA
TACTCCCTCCGTCCCAAAATAAGTGTCGTTTTCGCTTC

Secondary structure and sequence

TSD TIR

5'

3'

                   TA           C C   CCGA AA    C   A   AAATATA   T    -AACAT          A    ATAATTAGTATCATTGGAAAGATCTTTA
TACTCCCTCCGTCCCAAAA  AGTGTCGTTTT G TTC    G  ATAA TTT ACT       TAG AAAA      TAGTATTTAT GTAC                            
|||||||||||||||||||  ||||||||||| | |||    |  |||| ||| |||       ||| ||||      |||||||||| ||||                             
ATGAGGGAGGCAGGGTTTT  TCACAGCAAAA C AAG    C  TGTT AAA TGA       ATC TTTT      GTTATAAATA TAGA                            
                   TC           T C   AACA GG    C   C   GCTAAAC   -    ATATAC          -    GATTTATTTAAACAATTTTTTGATCTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810531

TACTCCCTCCGTCCCAAAATAAGTGTCGTTTTCGCTTCCCGAGAAATAACTTTAACTAAATATATAGTAAAAAACATTAGTATTTATAGTACATAATTAGTATCATTGGAAAGATCTTTAAGTCTAGTTTTTTAACAAATTTATTTAGAGATATAAATATTGCATATATTTTCTACAAATCGAGTCAAACTTGTGGCACAAGAACCTAAAACGACACTCTTTTTGGGACGGAGGGAGTA

Copy Cancel