SE2850534

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9539
  • Sorghum bicolor
  • SE2850534
  • PIF/harbinger
  • To49
  • chromosome_10:59858918-59859393
  • TAA
  • AGGCCTTGTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             TTCGCAAAAATTTTC       TCCATCACATCGAATCTTTGGTCGCATGTATAGAGCATTAAATATAGACGAAAATAAAAACTAATTGCACAGTTTATCTGTAATTTGTAAGACTCTGTTTAGTTCCCCACCCAAAATTTTTTCATCCATCCCATCGAATCTTTGGACACATGTATGGAACATTAAATATAGATAAAAAAATAAACTAATTACACAGTTTAGTT
  AGGCCTTGTTTAG               AAGATTC                                                                                                                                                                                                           
  |||||||||||||               |||||||                                                                                                                                                                                                           G
  TCCGGGACAAATC               TTTTAAA                                                                                                                                                                                                           
AA             -----TACCTCATAC       AAATCCACAGTGTAGCCTACACAGCCTTCCTACAGCCCTCCCCAAAAATCTTTGATTATTTTTTTATTTAATGTATCGAGCAGTCCTTTGACGTTCTGTTTAAATAATTCGTATTAATTAGACAGTAATCGTATACACCCAATGACATCGTGAATTCCGATTAGTACCTCATTGATCCGAATTTTCTAAGCAGAGAGTTAAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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