SE2830535

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9540
  • Sorghum bicolor
  • SE2830535
  • hAT
  • Hat39
  • chromosome_3:72122233-72122885
  • GTTTAGAT
  • GTTTAGATCAGTGGCGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
           T          G ATTTAAATTGAGGTGTGACGACTATCGAAATAGCTAATATAAGTTGCATATAATTTAAAAGTAAAGTGATTTCTATACAAATCCAAGATTATTCTATTCATCAAGTACAAAACATATAAGAACTACATATATAAATATTATATATGGAAGAAATTGAATATTAAGATAAAATATTGAAAAAAGATGTGAATGAACTCAATGGACAAACTGGGTGATACTGAAGCTTCAGTTATATTAGGAGACCTAGGTAATTGCATTTTCCTATCTTTCTACTTTTGAAATGCATTCTTAATTTTCTCAAGA
GTTTAGATCAG GGCGGAGGAA G                                                                                                                                                                                                                                                                                                               
||||||||||| |||||||||| |                                                                                                                                                                                                                                                                                                                
TAGATTTGGTC CCGCCTCGGT G                                                                                                                                                                                                                                                                                                               
           C          - GGTATACCGTTCCATACCGAGAACGGTATAGAGTTAAAGACTCAGTGAGAGAGGATTTAATGAAAGACGGTAATCGCAAAGATCATCTAACTAAAAAAATGAGATTTAACACCGAAACTTATGAGACTTCTTCGGAGTAACTTCCAACTTACGAAGATAGACTTACATGAACCCCAGAACTTGAGAACTAGAGAAGATCGAACACCCGAACTCACATACACGTGTCCGGCCGTTAGGTAAATAATAATTTTGTGTGCTAATTGTGATCATGTAATATAACTCTCTCTCTAAGTTTCCTTAACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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