SE2850537

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9542
  • Sorghum bicolor
  • SE2850537
  • PIF/harbinger
  • To46
  • chromosome_7:14067385-14067751
  • TTA
  • AGGGGCTGTTTGGATCCCTTCATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT    G            - ---------        -----     AT  -        CATAATGGATTAGGCTATTTGGCTTGGATTTTGACATTCCATAACTTTCCCAAGCTCACAAATAAGCCTATCTCAAATTCATAGGGTGGGAGATGGAAATATATTCTATAGATCATTATGCTATAATTCTA
  AGGG CTGTTTGGATCC C         TTCATTTT     GGAGG  TT GAAATCTA                                                                                                                                   
  |||| |||||||||||| |         ||||||||     |||||  || ||||||||                                                                                                                                   C
  TCCC GGCAAACCTAGG G         AAGTAAGA     AATGT  TA ATCTGTAT                                                                                                                                   
AT    G            A CCTTAACTT        ATATT     --  A        CTAATTAATTCGATTATATCAACATATACTTTATATAAACATATAGATAACAATCCGTATATTCCCTGTATGAATATACAACGTAAAGATAACATTCCTCCACTCAACTTCTCACACGATATTCTACCTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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