SE2850538

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9543
  • Sorghum bicolor
  • SE2850538
  • PIF/harbinger
  • To1
  • chromosome_1:51857011-51857259
  • TTA
  • AGGCCTTGTTTAGATGCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                   AAA   T     TTTTGACACTGTAGTATTTTCGTTTTTATTTGACAAACATTGTCTAATTATAGAGTAACTAGGCTTAAAAAATTCGTCTCGTGATTTACAGA
  AGGCCTTGTTTAGATGCAA   GTT TTGAA                                                                                            
  |||||||||||||||||||   ||| |||||                                                                                            T
  TCCGGAACAAATCTATGTT   TTT TTGGG                                                                                            
AT                   -AG   -     TTTTGAAATATTCTAAGGAGCAGTGTAGCTTAGAACGCCGTGTACGTACTTCATAATTTATATCTATTTTTCTTATTGATTAACGTGTCAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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