Plant MITE

SE2850541

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9546
Sorghum bicolor
SE2850541
PIF/harbinger
To2
chromosome_3:62868456-62868703
TTA
AGGCCTTGTTTACTTGCAAAATATTTTGCAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

TT            C  G     T            GTAAATAGTA    T            T  -   ATATTGTCCAATCATAGACTAACTAGCCTTAAAAGATTCGTCTCGTCAATTCCGACCA
  AGGCCTTGTTTA TT CAAAA ATTTTGCAAAAT          TCAA TTCGTTTGTATT GA CAA                                                          
  |||||||||||| || ||||| ||||||||||||          |||| |||||||||||| || |||                                                          A
  TCCGGAACAAAT AA GTTTT TAAAACGTTTTA          AGTT AAGAGGCAGTGT AG TTA                                                          
AT            C  G     T            -------AAA    T            -  C   GAAATCTGCATACGTACTTCATAATTTATATCTGCTTTTATTTTTGATTAATGTGTCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850541

TTAGGCCTTGTTTACTTGCAAAATATTTTGCAAAATGTAAATAGTATCAATTTCGTTTGTATTTGACAAATATTGTCCAATCATAGACTAACTAGCCTTAAAAGATTCGTCTCGTCAATTCCGACCAAACTGTGTAATTAGTTTTTATTTTCGTCTATATTTAATACTTCATGCATACGTCTAAAGATTCGATGTGACGGAGAATTTGAAAAATTTTGCAAAATTTTTTGGAACTAAACAAGGCCTTA

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