SE2850543

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9548
  • Sorghum bicolor
  • SE2850543
  • PIF/harbinger
  • To37
  • chromosome_3:70276049-70276296
  • TAA
  • AGGCCTTGTTTAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               ACACC       --CCAAAACTT    ------    --------------  TCCATCACATCGAATCTTGTAGCACATGCATAGAACATTAAATATAGATAAAAAAGATAACTAATTG
  AGGCCTTGTTTAGAT     CAAAAAC           TACA      AGAT              TC                                                                   
  |||||||||||||||     |||||||           ||||      ||||              ||                                                                    
  TCCGGAACAAATCTA     GTTTTTG           ATTG      CGTG              CT                                                                   
AA               ----A       AAAAACCTAAA    TGACAT    AAAGCAAAGATAAA  GTTTGTAATAAGTTAATACCTCATTAATCCGAATTTTCTAAGCAGAGCACTAAATTCCATTTGACAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3