SE2850545

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9550
  • Sorghum bicolor
  • SE2850545
  • PIF/harbinger
  • To1
  • chromosome_4:51272232-51272476
  • TAA
  • AGGCCTTGTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             TTCAC  C     CCAAAAACTTTTTAAGATTCCCTGTCACATCGAATCTTGTGGCACATGCATGGAGCATTAAATATAAAATGAAAATAAAAACTAATTGCACACCTGT
  AGGCCTTGTTTAG     CT AAAAA                                                                                                 
  |||||||||||||     || |||||                                                                                                 A
  TCCGGAACAAATC     TA GGTTT                                                                                                 
AA             -----  -     TTCAAAAACCTAAAACTGTGACATCATGAAAGCAAAAATAAACTGTTTGTAACAGGTTAATACCTCATTGATCCGAATTTTCTAAGCAGAGCGCTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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