Plant MITE

SE2850546

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9551
Sorghum bicolor
SE2850546
PIF/harbinger
To1
chromosome_8:25522577-25522825
CAA
GGCCTTGTTTAGTT

Secondary structure and sequence

TSD TIR

5'

3'

CAA              CACCTCAAAAACCAAAAACTTT        CTCCATCACA     TC   C     -----------ATG     AGCACTAAATATAGACGAAAATAAAAACTAATTGCACAGTTTACCTGTA
   GGCCTTGTTTAGTT                      TCAAAATT          TCGAA  TTG GGCAC              CATGG                                                 
   ||||||||||||||                      ||||||||          |||||  ||| |||||              |||||                                                 A
   CCGGAACAAATCAA                      AGTTTTAA          AGCTT  GAC TCGTG              CTGTT                                                 
AAC              ----------------------        AAAAACCAAA     -T   A     AAAGCAAAAATAAA     TGTAACAGGTTAGTATCTCATTGATCCGAATTTTCTAAGTAGAGCACTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850546

CAAGGCCTTGTTTAGTTCACCTCAAAAACCAAAAACTTTTCAAAATTCTCCATCACATCGAATCTTGCGGCACATGCATGGAGCACTAAATATAGACGAAAATAAAAACTAATTGCACAGTTTACCTGTAAATCACGAGATGAATCTTTTAAGCCTAGTTACTCTATGATTGGACAATGTTTGTCAAATAAAAACGAAAGTGCTACAGTTTCGAAAACCAAAAAAATTTTGAAACTAAACAAGGCCCAA

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