Plant MITE

SE2830549

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9554
Sorghum bicolor
SE2830549
hAT
Hat43
chromosome_1:53061676-53061858
AGCATGGT
CATGGTCAGGGGCGGAGCTACAGTGTACTC

Secondary structure and sequence

TSD TIR

5'

3'

AG    G    G          C    TAC  A      GCGGCCGCACCCACAAAATTTTTAAGAAACAGTGATAAGATCTAAATTTTAAC
  CATG TCAG GGCGGAGCTA AGTG   TC GTGGGT                                                     
  |||| |||| |||||||||| ||||   || ||||||                                                      
  GTAC AGTC CCGCCTCGAT TCAT   AG CTGTCT                                                     
TG    G    A          C    -TT  A      CCACGCAGACGGAAAAATCCACGTCCTCAAATGTTATACACCCACGTATATAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830549

AGCATGGTCAGGGGCGGAGCTACAGTGTACTCAGTGGGTGCGGCCGCACCCACAAAATTTTTAAGAAACAGTGATAAGATCTAAATTTTAACCATATATGCACCCACATATTGTAAACTCCTGCACCTAAAAAGGCAGACGCACCTCTGTCAGATTTACTCTAGCTCCGCCACTGAGCATGGT

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