Plant MITE

SE2830551

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9556
Sorghum bicolor
SE2830551
hAT
Hat44
chromosome_8:52793738-52794228
GGAGCGAC
GGAGCGACCAGGGTTTTCTTTTTCGG

Secondary structure and sequence

TSD TIR

5'

3'

 GA  GA                   ------------C     TTCGCCGAAATTTCCGAAATTTCGCATTTTTCAGTGAGGTCCGAAAAAAATTTTGTATCGGTCAAATTTTTCGGTTAAATTCATGTTTCGCTTCAAAATTACTCCAAACAACAATAAAATGACCCACCATATCTTCTAGTCTTATCAAAGCCCTAAATTTCTTCAAAATTATTTAATTTTCTCACTCACATATTCCGTGACACTAGC
G  GC  CCAGGGTTTTCTTTTTCGG             GAAAT                                                                                                                                                                                                               
|  ||  |||||||||||||||||||             |||||                                                                                                                                                                                                               A
C  CG  GGTTCCAAAAGAAAAAGCC             AGCCG                                                                                                                                                                                                               
 AG  AG                   ATCCTTTTAAAAA     TGGACGGCTATTTATTCTTTAAAGCCTGTAAAGTCTTTAAAGCCTACTTTAAATTTATTTAAGTTTAACTAAAAAATTTTTTAAACTGTAGTAAAATGATTTTTTCGAAAGATTATATAGTGAGTAGTGTTTAAATATATTATAATTGCTTTATTGTGTTATATAATAACGCCATCATATCGCCCGACTGCCACCCGCTCGACGTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830551

GGAGCGACCAGGGTTTTCTTTTTCGGCGAAATTTCGCCGAAATTTCCGAAATTTCGCATTTTTCAGTGAGGTCCGAAAAAAATTTTGTATCGGTCAAATTTTTCGGTTAAATTCATGTTTCGCTTCAAAATTACTCCAAACAACAATAAAATGACCCACCATATCTTCTAGTCTTATCAAAGCCCTAAATTTCTTCAAAATTATTTAATTTTCTCACTCACATATTCCGTGACACTAGCATATGCAGCTCGCCCACCGTCAGCCCGCTATACTACCGCAATAATATATTGTGTTATTTCGTTAATATTATATAAATTTGTGATGAGTGATATATTAGAAAGCTTTTTTAGTAAAATGATGTCAAATTTTTTAAAAAATCAATTTGAATTTATTTAAATTTCATCCGAAATTTCTGAAATGTCCGAAATTTCTTATTTATCGGCAGGTGCCGAAAAAATTTTCCTACCGAAAAAGAAAACCTTGGGAGCGAC

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