SE2850556

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9561
  • Sorghum bicolor
  • SE2850556
  • PIF/harbinger
  • To69
  • chromosome_2:56795660-56795898
  • TTA
  • AGGCCTCGTTCAGTTCGCGAAAATTTTTAGATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   C  C   C            T     -      AACA    AG   T   -T      TT    --AACA     C    ---   GAGTAACTAGACTTAAAAGGTTCGTCTTGTGATTT
  AGG CT GTT AGTTCGCGAAAA TTTTA GATTTT    CTGT  TAT TCG  TTTTAT  TATA      TTATC AATC   ATG                                   
  ||| || ||| |||||||||||| ||||| ||||||    ||||  ||| |||  ||||||  ||||      ||||| ||||   |||                                   A
  TCC GA CAA TCAAGCGTTTTT AAAAT CTAAAG    GGCA  GTG AGC  AAAATG  GTAT      CACAT AATT   ATA                                   
AT   T  A   A            T     T      ----    --   T   TT      CC    ACATAC     -    TAT   TATATTTTTATTTTTAATTAATGTGTTAAATAGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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