SE2850558

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9563
  • Sorghum bicolor
  • SE2850558
  • PIF/harbinger
  • To3
  • chromosome_5:15126396-15126643
  • TAA
  • AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA    C           ----ACTCAAAAAATAAAAA    TTC    TTCTTCGTAACATCGAATTTTGCGACACATGCATAAAACACTAAATATAGACGAAAATAAAAACTAATTGCACAGTT
  AGGC TTGTTTAGTTC                    ACTT   AAGA                                                                             
  |||| |||||||||||                    ||||   ||||                                                                             T
  TCCG AACAAATCAAG                    ATGA   TCGT                                                                             
AA    A           ATTAAAAAAAACCAAAACCC    -CA    AAAAGCAAAAATGAATCGTTAATAATAGGTTAGTACTTGATTGATATGAATTTTCTATATAGAGCGCTAAATGTCCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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