SE2850561

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9566
  • Sorghum bicolor
  • SE2850561
  • PIF/harbinger
  • To23
  • chromosome_2:3401331-3401629
  • TAA
  • AGGGGGTGTTTAGTTCCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA       G           TTTTATTTCAAAAAA   TGGGTTTTGGTCCATCATTTTGCATAATGGAACTAAACACCATGCAAAATTTTTAGCAAAAAGGTGGTTATTCTCCATTTTGGATTTTGGCCCCAAGAGGCCAAAAAAACCCAA
  AGGGGGT TTTAGTTCCCC               TTT                                                                                                                  
  ||||||| |||||||||||               |||                                                                                                                  A
  TCCCCCA AAATCAAGGGG               CGT                                                                                                                  
AA       G           --------TATTTTA   TTTACGATTGATGAAACCTTACCACCTTACGCTTTATGGTTTTAAAAGTCCCAATACAAATCAAGGTAGGTTTTACGTCTTAAATAACGGGAGTACTCCCGGAGAACTCCGAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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