Plant MITE

SE2850562

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9567
Sorghum bicolor
SE2850562
PIF/harbinger
To70
chromosome_2:55741255-55741502
TCA
AGGCCTTGTTTAGTTTT

Secondary structure and sequence

TSD TIR

5'

3'

TC                 -------AAAAA     ------    A --  - TACCATAGCACTTTCATTTGTATTTGACAAATATTGTTTAATTATGGACTAACTAGGCTCAAAAGGATTCGTCTCACA
  AGGCCTTGTTTAGTTTT            AAATG      CAAA T  GG A                                                                              
  |||||||||||||||||            |||||      |||| |  || |                                                                              A
  TCCGGAACAAATCAAGG            ATTTG      TCTA A  AG A                                                                              
AC                 ATCTTTTAAAAC     CTTAAA    - AA  C GTGTAGCTTAGAACGACGCGTACGTATCTTGTAATTTATATCTATTTTTATTATTTAATAATATGTTAATAGACATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850562

TCAGGCCTTGTTTAGTTTTAAAAAAAATGCAAAATGGATACCATAGCACTTTCATTTGTATTTGACAAATATTGTTTAATTATGGACTAACTAGGCTCAAAAGGATTCGTCTCACAAATTACAGATAATTGTATAATAATTTATTATTTTTATCTATATTTAATGTTCTATGCATGCGCAGCAAGATTCGATGTGACGAAAAATCTAAATTCGTTTACAAAATTTTCTAGGAACTAAACAAGGCCTCA

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