SE2850564

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9569
  • Sorghum bicolor
  • SE2850564
  • PIF/harbinger
  • To2
  • chromosome_1:69883306-69883552
  • TAA
  • AGGCCTTGTTTAGTTTCAAAAAATTTTGCAAAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               T                   TTTC  -   --        CA   AATCTTTAGACGTATGCATGGAGTATTAAATATAGATGAAAATAAAAAATAATTGCACAATTTGGT
  AGGCCTTGTTTAGTT CAAAAAATTTTGCAAAATT    AG ATT  CTCCGTCA  TCG                                                                  
  ||||||||||||||| |||||||||||||||||||    || |||  ||||||||  |||                                                                  C
  TCCGGAACAAATCAA GTTTTTTAAAATGTTTTAG    CT TGA  TCGTGAAA  GCA                                                                  
AA               -                   ----  G   CA        --   AACATAAACTGTTTTTAACAGGTTAGTACCTGATTGATCGGAGTTTTCTAAGCAGAGTAGTTAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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