SE2850565

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9570
  • Sorghum bicolor
  • SE2850565
  • PIF/harbinger
  • To4
  • chromosome_1:54141595-54141843
  • TAA
  • AGGCCTTGTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             -----  G     AATTTTTAGATTTCGCTACTGTAGCATTTTCGTTTGTTTTTGATAAATATTATCTAATCATAGACTAACTAGGGTCAAAAGATTCGTCTCGTAATTTAC
  AGGCCTTGTTTAG     AT TGAAA                                                                                                   
  |||||||||||||     || |||||                                                                                                   A
  TCCGGAACAAATC     TG GTTTT                                                                                                   
AA             AAAGG  -     AGGTTTTTCAAAAGTTCTAAGGGGTAGTGTAGCTTAAAATGCCGTGTACGTACTTCGTGATTTACATCTGCTTTTGTTTTTGATTAATGTGTCAAACGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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