SE2850566

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9571
  • Sorghum bicolor
  • SE2850566
  • PIF/harbinger
  • To4
  • chromosome_2:11089472-11089709
  • TTA
  • AGGCCTTGTTTAGTTCGCAAAAATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               C          --------     ATTTTCCGTCACATCAAATCTTTGGTCGCATGCATGAAGTATTAAATATAGATAAAAATAAAAACTAATTGTACAGTTTACC
  AGGCCTTGTTTAGTT GCAAAAATTT        TCAAA                                                                                  
  ||||||||||||||| ||||||||||        |||||                                                                                   
  TCCGGAACAAATCAA CGTTTTTAAA        CCGAT                                                                                  
AT               C          ATCCAAAA     GACATCGTGAAAGCAAAAATAAACTGTTTGTAATAGATTAGTGTCTCATTGATCCGAGTTTTCTAAGTAGAGTGTTTAATGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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