SE2850570

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9575
  • Sorghum bicolor
  • SE2850570
  • PIF/harbinger
  • To1
  • chromosome_7:61877295-61877782
  • TTA
  • AGGCCTTGTTTAGTTCACCCCGAAAACCAAAAACTTTTCAAGATTCCCCGTTACATCGAATCTTGAGGCACATGCATGGAACATTAAATATAGATGAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TT             -TT   CC        A        T          C                A                                  CAAA             C                G   C        CAA C      A      A      C   G               C                             C    CG         CTTAG
  AGGCCTTGTTTAG   CAC  CGAAAACC AAAACTTT CAAGATTCCC GTTACATCGAATCTTG GGCACATGCATGGAACATTAAATATAGATGAAAA    AACTAATTACACA TTTGCCTGTAAATCAC AGA GAATCTTT   G CTAGTT CTCCAT ATTGGA AAT TTTGTCAAATAAAAA GAAAGTGTTACAGTGTCAAAATCCAAAAA TTTT  GATCTAAGC     
  |||||||||||||   |||  |||||||| |||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    ||||||||||||| |||||||||||||||| ||| ||||||||   | |||||| |||||| |||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||  |||||||||      
  TCCGGAACAAATC   GTG  GTTTTTGG TTTTGAAA GTTCTAAGGG TAGTGTAGCTTAGAAC CCGTGTACGTATCTTGTAATTTATATCTATTTTT    TTGATTAATGTGT AAATGGACATTTAGTG TCT CTTAGAAA   C GATCAA GAGGTA TAACCT TTA AAACAGTTTATTTTT CTTTCACGATGTCACAGTTTTAGGTTTTT AAAA  CTAGATTTG     
AT             TAT   -A        A        T          -                G                                  TCTA             A                G   A        ATG A      C      C      A   A               A                             C    -A         TTCCG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End