SE2850582

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9587
  • Sorghum bicolor
  • SE2850582
  • PIF/harbinger
  • To2
  • chromosome_3:64988016-64988504
  • TAG
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
TA        --   ---     T  --           ---   ATTTTTCAGATTCCCCGTCACATCGAATCTTTAGACGCATGCATAGAGTATTAAATATAGATGAAAATAAAAACTAATTGCACAGTTTGGTCGAAATTGACGAGACGAATCTTTTGAGCCTAGTTAGTCCATGATTGGACAATTTTTGTCAAATACAAACGAAAGTGCTACAGTGTCGATTTTGCAAAATTTTTTGGAACTAAAC
  GGGCCTTG  TTT   AGTTC CA  AAAAATTTTGC   AAA                                                                                                                                                                                                             
  ||||||||  |||   ||||| ||  |||||||||||   |||                                                                                                                                                                                                              
  TCCCGGAA  AAT   GACTT TT  TTTTTCAAAAG   TGC                                                                                                                                                                                                             
GA        CA   CAA     -  CA           CCA   CATCATAAAAGCAAACAAACATTGTTTATAATAGATTAGTAACTGATTGATCCTAATTTTCTAAACAGAGCATTAAATGTCGATTTGACACATTAATCAAAAACAAAAGCAGATATAAATTATAAAATATGTACACGGTGTTCTAAGCTACACTGCTCTTTAGAACTTTTGAAAAACCAAAAGTTCCATTTTCCGGGATCCGGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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