SE2830585

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9590
  • Sorghum bicolor
  • SE2830585
  • hAT
  • Hat16
  • chromosome_3:68820561-68821053
  • AGCGCGCG
  • GCGCGCGTATAGATGGCCATCGGGCCGTGCC

Secondary structure and sequence

TSD    TIR
5'



3'
A      G     A       -C  G     -     TCGGCCCGTGCCGTGCCGTGCCTGCCCCGGGCCGCGCCGTGCCGGCCGGGCCGTGCCATCACCGTGCCTCGTGCCGGGGGTATGGCCCATGGCACGGCCCGCGGGCCGTCGGGCCGGCCCGAAGGCACGGCGGGCCACCGGGCCAAGGTCGTGCCAGGCCAGTAGCAGGTCTATATTTTCTTTTTTTGTTTAAAATTAGTAGGCTACATT
 GCGCGC TATAG TGGCCAT  GG CCGTG CCGGC                                                                                                                                                                                                                  
 |||||| ||||| |||||||  || ||||| |||||                                                                                                                                                                                                                  T
 CGCGCG ATATC ACCGGTA  TC GGCAC GGGCA                                                                                                                                                                                                                  
G      A     A       CA  G     C     ACCGTGCCGTAAAACCGGGCCGGGCTCGTGCCGTGCCGGGCTGTTGATGGCCCGGCACGGACCCGGCGGTGGCACCGGGCACCGTGCCGAGTCCGTGCCGGGCTGCCGGGCCACGAATTACAGGGTCATTTTTTATATTGAAAAATTAAGATTTTTTCTCTTTTATATCCAGACAAAACGGGTAGGTAGGTAGGACTAACCGAACAATTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End