SE2850588

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9593
  • Sorghum bicolor
  • SE2850588
  • PIF/harbinger
  • To23
  • chromosome_6:58622257-58622562
  • TAA
  • AGGGGGTCTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA       C        CC   AAAA      AT   AAATGCCAACTACTTTGGAGTGATGAAATGTAAAATGCCAAAATTTTTAGGGTCATGTTTAGTTCCATCCAAAATGCAGAATTTATTGCCCTCATGAGAGCCTCTTGAGGCTCTTTTT
  AGGGGGT TTTAGTTC  CAT    TCCAAA  GCA                                                                                                                      
  ||||||| ||||||||  |||    ||||||  |||                                                                                                                      T
  TCCCCCA AAATCAAG  GGA    AAAAAG  GTT                                                                                                                      
AA       C        -A   ----      --   TTTTTAACCCAAAACCAGGTAGTAAAACGTTTTACCTTGATTTATGGTACGTTTAAAAAACCGTTTTTTCCACCAATAAGAGGTAAAACCTAAAACCGGAGTTCTCTTTTTTTTTTGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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