SE2830589

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9594
  • Sorghum bicolor
  • SE2830589
  • hAT
  • Hat46
  • chromosome_6:26465363-26465907
  • GTCCTAAA
  • TAGGGATGTCAACGGGGCCCCGT

Secondary structure and sequence

TSD    TIR
5'



3' 
GTCCTAAA            C    ----            AT  -     -   GAATTCACCTATTAGGGGACGCGGATGGTATATATTTGACCCCCACGGGGAATTAAATGGGACGAAAGTTGTCTCCATCGGGGTTCACGGGGACGGGGATGGTATGCATGCCCCCGTCCCCGCTCCCCACGGGGATCGACTCTGAAGGCCCATATACTTGTAAGGTCCAATAATTGTGATATATAAGCAAAGTTAAAACCCTAATCCTTCACTTTCTCAGT
        TAGGGATGTCAA GGGG    CCCCGTTCCCTG  TC CCCGC GAG                                                                                                                                                                                                                             
        |||||||||||| ||||    ||||||||||||  || ||||| |||                                                                                                                                                                                                                             C
        ATCTCTATAGTT CCCC    GGGGTAGCCCCT  CA GAAGG GTA                                                                                                                                                                                                                             
AAATCCTG            A    TTAA            --  C     G   GGGGCAGGAGTACGCCTTCTTTGAAGGGGCAGGGGCAGGGGCGTTTTACAGTGTCCCCTCTAAAAGAGGGGTAGGGGTAGGGGCACGCACCTTATTAGGGGTACCCCAAGGGACATAGGTGCAATCAAGCATAATCAAATACACTACAGTTGATAAGTGTTTAGGTACATAAGTATACTTACCATATATTTGTTTAGGGAAGATATTTCTGAGTGTAAACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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