SE2860591

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9596
  • Sorghum bicolor
  • SE2860591
  • Micron
  • Mim1
  • chromosome_1:5215018-5215493
  • ATATATA
  • TATATATATATA

Secondary structure and sequence

TSD    TIR
5'



3'
A            CATA   T    C    CTA                                 ---------              A              C         G            CAA  T  CCA      A                              A                          C           G  C     T     T           T
 TATATATATATA    CGG AGCG TATT   CACCTTAGGTGTAGAATATTATTCTACACCGTA         AGTCAAAACTGAGT GAAAAAATACTGAG AGTACTGGA AGTGTTCAGTAT   CT GT   ACACTC GGACCATGAAATACTGAACAATACTGAAAC CGAATACTGAGCGATACTGAATTTTG TCAGTATAACA TT GGTGT GAATA TATTCTACACC 
 ||||||||||||    ||| |||| ||||   |||||||||||||||||||||||||||||||||         |||||||||||||| |||||||||||||| ||||||||| ||||||||||||   || ||   |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||| ||||| ||||||||||| A
 ATATATATATAT    GCC TCGC ATAA   GTGGGATCCACATCTTATAATAAGATGTGGCGT         TCAGTTTTGACTCG CTTTTTTATGACTC TCATGACTT TTACAAGTCATA   GA CA   TGTGAG CCTGGTGTTTTATGACTTGTTATGACTTTG GCTTATGACTTGCTATGACTTAAAAC AGTCATATTGT AA CCACA CTTAT ATAAGATGTGG 
             --AG   C    C    ACA                                 ATGTGGCGT              A              A         G            ATA  T  TCA      A                              C                          A           G  A     T     C           G

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End