SE2850593

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9598
  • Sorghum bicolor
  • SE2850593
  • PIF/harbinger
  • To13
  • chromosome_3:56058725-56059015
  • TAA
  • AGAGCAACTCCAAGAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             G   -------CT     AA        TCAAATTTTATTGGTTAGCCATTTTGTAAAGTAAAAAACTTCTTAAAAAGAAGAGATCCACAACAGCCTTGCTATTTTACAAAATCATATAACTTGTGTCAGTGGT
  AGAGCAACTCCAA AGC         GGCTA  ATTAGTAG                                                                                                          
  ||||||||||||| |||         |||||  ||||||||                                                                                                          T
  TCTCGTTGAGGTT TCG         GAACA  CACCACCG                                                                                                          
AA             G   AACAGATAA     -A        ATAAAATTTTAAACGTATTGTTTTCCATCTGAGGTTATCTACACGATAGATCAAAACATTTTATCTTTCAACCGATAAAGAACTAAAAGCGAACGGTATATATCGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3