Plant MITE

SE2850597

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9602
Sorghum bicolor
SE2850597
PIF/harbinger
To1
chromosome_8:55207897-55208133
TTA
AGGCCTTGTTTAGTTCACAAAATTTTT

Secondary structure and sequence

TSD TIR

5'

3'

TT                -AC         TGTTT      ACT  AGC     ---  TTTT  --- T  --   ACATTGTCCAATCACGGAGTAACTAGGCTCAAAAGATTCATCTCACAAATTA
  AGGCCTTGTTTAGTTC   AAAATTTTT     TTGGGT   GT   ATTTC   GT    AT   T GA  CAA                                                    
  ||||||||||||||||   |||||||||     ||||||   ||   |||||   ||    ||   | ||  |||                                                    C
  TCCGGAACAAATCAAG   TTTTAAAAG     TTCTAA   GG   AGTGT   TT    AG   C CA  ATA                                                    
AT                CAT         -----      -AG  --C     AGC  ----  AAA -  GC   CGTACTTCGTAATTTATATCTGCTTTTATTTTTGATTGACGTGTCAAATGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850597

TTAGGCCTTGTTTAGTTCACAAAATTTTTTGTTTTTGGGTACTGTAGCATTTCGTTTTTATTTGACAAACATTGTCCAATCACGGAGTAACTAGGCTCAAAAGATTCATCTCACAAATTACAGGTAAACTGTGCAGTTAGTTTTTATTTTCGTCTATATTTAATGCTTCATGCATACGACCAAAGATTCGATGTGACGGGAAATCTTGAAAATTTTTACGAACTAAACAAGGCCTTA

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