SE2850598

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9603
  • Sorghum bicolor
  • SE2850598
  • PIF/harbinger
  • To2
  • chromosome_10:1522385-1522622
  • TAA
  • AGGCCTTGTTTAGTTTCTAAAATTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                -CT         C   ATTCCCCGTCACATCGAATCTTTAAACGTATGCATAAAACATTAAATATAAATAAAAATAAAAACTAACTGCACAGTTTGCCTGTA
  AGGCCTTGTTTAGTTT   AAAATTTTT AAG                                                                                      
  ||||||||||||||||   ||||||||| |||                                                                                       
  TCCGGAGCAAATCAAA   TTTTAAAAA CGG                                                                                      
AA                CAC         -   AAGCCGATGACATCGTGAAAGCAAACATAAACTTTTTATAACAGGTTAGTACCTGATTGATCCGAGTTTTCTAAGTAGAGCATTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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